Volume 6(11); 2016 Nov

Genetics of Sex

Sequential Turnovers of Sex Chromosomes in African Clawed Frogs (Xenopus) Suggest Some Genomic Regions Are Good at Sex Determination

Benjamin L. S. Furman, Ben J. Evans

G3 (Bethesda) 2016 Nov; 6(11): 3625–3633. Published online 2016 Sep 7. doi: 10.1534/g3.116.033423

PMCID:: PMC5100861

Article PDF–878K

Advances in Understanding Mating Type Gene Organization in the Mushroom-Forming Fungus Flammulina velutipes

Wei Wang, Lingdan Lian, Ping Xu, Tiansheng Chou, Irum Mukhtar, Aron Osakina, Muhammad Waqas, Bingzhi Chen, Xinrui Liu, Fang Liu, Baogui Xie, Arend F. van Peer

G3 (Bethesda) 2016 Nov; 6(11): 3635–3645. Published online 2016 Sep 9. doi: 10.1534/g3.116.034637

PMCID:: PMC5100862

Article PDF–1.6M

Genomic Selection

Genomic Prediction of Single Crosses in the Early Stages of a Maize Hybrid Breeding Pipeline

Dnyaneshwar C. Kadam, Sarah M. Potts, Martin O. Bohn, Alexander E. Lipka, Aaron J. Lorenz

G3 (Bethesda) 2016 Nov; 6(11): 3443–3453. Published online 2016 Sep 19. doi: 10.1534/g3.116.031286

Correction in:: G3 (Bethesda). 2017 Oct; 7(10): 3557–3558.

PMCID:: PMC5100843

Article PDF–1.5M

First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae)

Victoria L. Sork, Sorel T. Fitz-Gibbon, Daniela Puiu, Marc Crepeau, Paul F. Gugger, Rachel Sherman, Kristian Stevens, Charles H. Langley, Matteo Pellegrini, Steven L. Salzberg

G3 (Bethesda) 2016 Nov; 6(11): 3485–3495. Published online 2016 Sep 12. doi: 10.1534/g3.116.030411

PMCID:: PMC5100847

Article PDF–1.7M

Marker-Based Estimates Reveal Significant Nonadditive Effects in Clonally Propagated Cassava (Manihot esculenta): Implications for the Prediction of Total Genetic Value and the Selection of Varieties

Marnin D. Wolfe, Peter Kulakow, Ismail Y. Rabbi, Jean-Luc Jannink

G3 (Bethesda) 2016 Nov; 6(11): 3497–3506. Published online 2016 Aug 30. doi: 10.1534/g3.116.033332

PMCID:: PMC5100848

Article PDF–1.1M

Genomic Prediction of Resistance to Pasteurellosis in Gilthead Sea Bream (Sparus aurata) Using 2b-RAD Sequencing

Christos Palaiokostas, Serena Ferraresso, Rafaella Franch, Ross D. Houston, Luca Bargelloni

G3 (Bethesda) 2016 Nov; 6(11): 3693–3700. Published online 2016 Sep 20. doi: 10.1534/g3.116.035220

PMCID:: PMC5100868

Article PDF–1.0M

Improvement of Predictive Ability by Uniform Coverage of the Target Genetic Space

Daniela Bustos-Korts, Marcos Malosetti, Scott Chapman, Ben Biddulph, Fred van Eeuwijk

G3 (Bethesda) 2016 Nov; 6(11): 3733–3747. Published online 2016 Sep 22. doi: 10.1534/g3.116.035410

PMCID:: PMC5100872

Article PDF–1.8M

Investigations

Proper Sterol Distribution Is Required for Candida albicans Hyphal Formation and Virulence

Paula McCourt, Hsing-Yin Liu, Josie E. Parker, Christina Gallo-Ebert, Melissa Donigan, Adam Bata, Caroline Giordano, Steven L. Kelly, Joseph T. Nickels, Jr

G3 (Bethesda) 2016 Nov; 6(11): 3455–3465. Published online 2016 Aug 31. doi: 10.1534/g3.116.033969

PMCID:: PMC5100844

Article PDF–1.3M

Depletion of Shine-Dalgarno Sequences Within Bacterial Coding Regions Is Expression Dependent

Chuyue Yang, Adam J. Hockenberry, Michael C. Jewett, Luís A. N. Amaral

G3 (Bethesda) 2016 Nov; 6(11): 3467–3474. Published online 2016 Sep 7. doi: 10.1534/g3.116.032227

PMCID:: PMC5100845

Article PDF–1.1M

Multiple Transcript Properties Related to Translation Affect mRNA Degradation Rates in Saccharomyces cerevisiae

Benjamin Neymotin, Victoria Ettorre, David Gresham

G3 (Bethesda) 2016 Nov; 6(11): 3475–3483. Published online 2016 Sep 13. doi: 10.1534/g3.116.032276

PMCID:: PMC5100846

Article PDF–1.1M

Suitability of Different Mapping Algorithms for Genome-Wide Polymorphism Scans with Pool-Seq Data

Robert Kofler, Anna Maria Langmüller, Pierre Nouhaud, Kathrin Anna Otte, Christian Schlötterer

G3 (Bethesda) 2016 Nov; 6(11): 3507–3515. Published online 2016 Sep 9. doi: 10.1534/g3.116.034488

PMCID:: PMC5100849

Article PDF–1.1M

A Pedigree-Based Map of Recombination in the Domestic Dog Genome

Christopher L. Campbell, Claude Bhérer, Bernice E. Morrow, Adam R. Boyko, Adam Auton

G3 (Bethesda) 2016 Nov; 6(11): 3517–3524. Published online 2016 Sep 2. doi: 10.1534/g3.116.034678

PMCID:: PMC5100850

Article PDF–1.1M

Effect of Two Lipoprotein (a)-Associated Genetic Variants on Plasminogen Levels and Fibrinolysis

Hong Wang, Chan E. Hong, Joshua P. Lewis, Yanbei Zhu, Xing Wang, Xin Chu, Joshua Backman, Ziying Hu, Peixin Yang, Christopher D. Still, Glenn S. Gerhard, Mao Fu

G3 (Bethesda) 2016 Nov; 6(11): 3525–3532. Published online 2016 Sep 6. doi: 10.1534/g3.116.034702

PMCID:: PMC5100851

Article PDF–1.1M

Epidermal Growth Factor Receptor Cell Survival Signaling Requires Phosphatidylcholine Biosynthesis

Matt Crook, Awani Upadhyay, Liyana J. Ido, Wendy Hanna-Rose

G3 (Bethesda) 2016 Nov; 6(11): 3533–3540. Published online 2016 Sep 7. doi: 10.1534/g3.116.034850

PMCID:: PMC5100852

Article PDF–1.1M

The Smaug RNA-Binding Protein Is Essential for microRNA Synthesis During the Drosophila Maternal-to-Zygotic Transition

Hua Luo, Xiao Li, Julie M. Claycomb, Howard D. Lipshitz

G3 (Bethesda) 2016 Nov; 6(11): 3541–3551. Published online 2016 Sep 1. doi: 10.1534/g3.116.034199

PMCID:: PMC5100853

Article PDF–1.4M

Temporal Expression of a Master Regulator Drives Synchronous Sporulation in Budding Yeast

Minghao Chia, Folkert J. van Werven

G3 (Bethesda) 2016 Nov; 6(11): 3553–3560. Published online 2016 Sep 6. doi: 10.1534/g3.116.034983

PMCID:: PMC5100854

Article PDF–1.3M

The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum)

Elizabeth R. Milano, David B. Lowry, Thomas E. Juenger

G3 (Bethesda) 2016 Nov; 6(11): 3561–3570. Published online 2016 Sep 8. doi: 10.1534/g3.116.032763

PMCID:: PMC5100855

Article PDF–1.1M

Genome Sequencing of Chromosome 1 Substitution Lines Derived from Chinese Wild Mice Revealed a Unique Resource for Genetic Studies of Complex Traits

Fuyi Xu, Tianzhu Chao, Yingming Liang, Kai Li, Shixian Hu, Maochun Wang, Yuxun Zhou, Hongyan Xu, Junhua Xiao

G3 (Bethesda) 2016 Nov; 6(11): 3571–3580. Published online 2016 Sep 6. doi: 10.1534/g3.116.033902

PMCID:: PMC5100856

Article PDF–1.8M

Divergent DNA Methylation Provides Insights into the Evolution of Duplicate Genes in Zebrafish

Zaixuan Zhong, Kang Du, Qian Yu, Yong E. Zhang, Shunping He

G3 (Bethesda) 2016 Nov; 6(11): 3581–3591. Published online 2016 Sep 19. doi: 10.1534/g3.116.032243

PMCID:: PMC5100857

Article PDF–1.6M

Predictive Model and Software for Inbreeding-Purging Analysis of Pedigreed Populations

Aurora García-Dorado, Jinliang Wang, Eugenio López-Cortegano

G3 (Bethesda) 2016 Nov; 6(11): 3593–3601. Published online 2016 Sep 6. doi: 10.1534/g3.116.032425

PMCID:: PMC5100858

Article PDF–877K

Genomic, Transcriptomic, and Proteomic Analysis Provide Insights Into the Cold Adaptation Mechanism of the Obligate Psychrophilic Fungus Mrakia psychrophila

Yao Su, Xianzhi Jiang, Wenping Wu, Manman Wang, M. Imran Hamid, Meichun Xiang, Xingzhong Liu

G3 (Bethesda) 2016 Nov; 6(11): 3603–3613. Published online 2016 Sep 14. doi: 10.1534/g3.116.033308

PMCID:: PMC5100859

Article PDF–1.8M

Transcriptome Analysis Reveals that Vitamin A Metabolism in the Liver Affects Feed Efficiency in Pigs

Yunxia Zhao, Ye Hou, Fei Liu, An Liu, Lu Jing, Changzhi Zhao, Yu Luan, Yuanxin Miao, Shuhong Zhao, Xinyun Li

G3 (Bethesda) 2016 Nov; 6(11): 3615–3624. Published online 2016 Sep 14. doi: 10.1534/g3.116.032839

PMCID:: PMC5100860

Article PDF–1.9M

Simple and Efficient Targeting of Multiple Genes Through CRISPR-Cas9 in Physcomitrella patens

Mauricio Lopez-Obando, Beate Hoffmann, Carine Géry, Anouchka Guyon-Debast, Evelyne Téoulé, Catherine Rameau, Sandrine Bonhomme, Fabien Nogué

G3 (Bethesda) 2016 Nov; 6(11): 3647–3653. Published online 2016 Sep 8. doi: 10.1534/g3.116.033266

PMCID:: PMC5100863

Article PDF–1.4M

In Silico Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies

Xiaofan Zhou, David Peris, Jacek Kominek, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas

G3 (Bethesda) 2016 Nov; 6(11): 3655–3662. Published online 2016 Sep 15. doi: 10.1534/g3.116.034249

PMCID:: PMC5100864

Article PDF–1014K

Determinants in the LIN-12/Notch Intracellular Domain That Govern Its Activity and Stability During Caenorhabditis elegans Vulval Development

Yuting Deng, Iva Greenwald

G3 (Bethesda) 2016 Nov; 6(11): 3663–3670. Published online 2016 Sep 16. doi: 10.1534/g3.116.034363

PMCID:: PMC5100865

Article PDF–1.4M

Transcriptome Profiling in Rat Inbred Strains and Experimental Cross Reveals Discrepant Genetic Architecture of Genome-Wide Gene Expression

Pamela J. Kaisaki, Georg W. Otto, Karène Argoud, Stephan C. Collins, Robert H. Wallis, Steven P. Wilder, Anthony C. Y. Yau, Christophe Hue, Sophie Calderari, Marie-Thérèse Bihoreau, Jean-Baptiste Cazier, Richard Mott, Dominique Gauguier

G3 (Bethesda) 2016 Nov; 6(11): 3671–3683. Published online 2016 Sep 19. doi: 10.1534/g3.116.033274

PMCID:: PMC5100866

Article PDF–2.2M

Non-Mendelian Dominant Maternal Effects Caused by CRISPR/Cas9 Transgenic Components in Drosophila melanogaster

Chun-Chieh Lin, Christopher J. Potter

G3 (Bethesda) 2016 Nov; 6(11): 3685–3691. Published online 2016 Sep 16. doi: 10.1534/g3.116.034884

PMCID:: PMC5100867

Article PDF–1.5M

Extensive Epigenetic Changes Accompany Terminal Differentiation of Mouse Hepatocytes After Birth

Matthew V. Cannon, Genay Pilarowski, Xiuli Liu, David Serre

G3 (Bethesda) 2016 Nov; 6(11): 3701–3709. Published online 2016 Sep 21. doi: 10.1534/g3.116.034785

PMCID:: PMC5100869

Article PDF–1.2M

Distinct and Overlapping Requirements for Cyclins A, B, and B3 in Drosophila Female Meiosis

Mohammed Bourouh, Rajdeep Dhaliwal, Ketki Rana, Sucheta Sinha, Zhihao Guo, Andrew Swan

G3 (Bethesda) 2016 Nov; 6(11): 3711–3724. Published online 2016 Sep 20. doi: 10.1534/g3.116.033050

PMCID:: PMC5100870

Article PDF–2.5M

The Selective Maintenance of Allelic Variation Under Generalized Dominance

Hamish G. Spencer, Cuilodair Mitchell

G3 (Bethesda) 2016 Nov; 6(11): 3725–3732. Published online 2016 Sep 21. doi: 10.1534/g3.116.028076

PMCID:: PMC5100871

Article PDF–1.2M

A Simplified Strategy for Introducing Genetic Variants into Drosophila Compound Autosome Stocks

William D. Gilliland, Dennis P. May, Eileen M. Colwell, James A. Kennison

G3 (Bethesda) 2016 Nov; 6(11): 3749–3755. Published online 2016 Sep 22. doi: 10.1534/g3.116.035634

PMCID:: PMC5100873

Article PDF–1.0M

Mutant Screen Report

CRISPR/Cas9-Mediated Genome Editing and Mutagenesis of EcChi4 in Exopalaemon carinicauda

Tianshu Gui, Jiquan Zhang, Fengge Song, Yuying Sun, Shijun Xie, Kuijie Yu, Jianhai Xiang

G3 (Bethesda) 2016 Nov; 6(11): 3757–3764. Published online 2016 Sep 7. doi: 10.1534/g3.116.034082

PMCID:: PMC5100874

Article PDF–2.6M

Articles from G3: Genes|Genomes|Genetics are provided here courtesy of Oxford University Press